華中農(nóng)業(yè)大學(xué)

基本信息姓名: 章元明 出生年月: 1965.5
性別: 男 碩/博導(dǎo)： 博導(dǎo)
民族: 漢 開設(shè)課程： 數(shù)量遺傳學(xué)（研究生課程）
職稱: 教授 研究方向： 統(tǒng)計基因組學(xué)、基因分子進(jìn)化、大豆遺傳學(xué)
學(xué)位: 農(nóng)學(xué)博士

聯(lián)系方式 辦公電話：
電子郵件：soyzhang@mail.hzau.edu.cn

個人簡介調(diào)劑信息：
歡迎2015年報考數(shù)學(xué)專業(yè)、統(tǒng)計學(xué)專業(yè)、生物信息學(xué)專業(yè)、計算機科學(xué)專業(yè)、生物科學(xué)與農(nóng)學(xué)專業(yè)碩士研究生調(diào)劑到統(tǒng)計基因組學(xué)團隊！與章元明教授(soyzhang@mail.hzau.edu.cn)聯(lián)系。

主要研究方向：
1、統(tǒng)計基因組學(xué)：目前從事海量數(shù)據(jù)的遺傳分析方法研究。代表性論文：提出懲罰最大
似然方法（Heredity, SCI引用>50），參與提出Bayesian壓縮估計方法（Genetics,
SCI引用接近100次）
2、基因分子進(jìn)化：目前從事基因組變異與復(fù)雜性狀形成的分子進(jìn)化機制研究。代表性論
文：基因組變異與豆科植物根瘤固氮(MBE 2013，影響因子：14.308)、禾本科植物高
淀粉含量(MBE 2012,影響因子：10.353)和高蛋白質(zhì)含量的分子進(jìn)化機制
3、大豆遺傳學(xué)：在TAG和Mol Breeding等發(fā)表論文多篇

學(xué)術(shù)等兼職
1、BMC Genetics Associate Editor 2011-
2、Canadian Journal of Plant Science Associate Editor 2011-2016
3、作物學(xué)報 編委 2014-
4、Journal of Genetics Study Associate Editor 2012-
5、Frontiers in Statistical Genetics and Methodology Review Editor 2011-
6、Austin Biometrics and Biostatistics Associate Editor
7、南京農(nóng)業(yè)大學(xué)學(xué)報（自然科學(xué)版） 編委 2007.01~2016.12
8、江蘇省第八屆現(xiàn)場統(tǒng)計研究會 理事 2013.11-2017.11

工作經(jīng)歷
1、華中農(nóng)業(yè)大學(xué)植物科技學(xué)院教授，組建數(shù)量遺傳學(xué)研究團隊；
2、南京農(nóng)業(yè)大學(xué)農(nóng)學(xué)院作物遺傳育種專業(yè)，歷任副教授（1999）和教授（2002），從事
統(tǒng)計基因組學(xué)、基因分子進(jìn)化和大豆遺傳學(xué)研究工作；其中，2003-2005年在美國加州大學(xué)
Riverside分校做統(tǒng)計遺傳與基因組學(xué)博士后：
3、西南大學(xué)榮昌分校，歷任見習(xí)助教、助教（1987）、講師（1992）、副教授（1995）；
從事生物統(tǒng)計學(xué)的教學(xué)與應(yīng)用研究工作，曾任重慶市遺傳學(xué)會常務(wù)理事、動物科學(xué)系主任助理和
副主任、重慶市榮昌縣政協(xié)常委。

獲獎情況
1、Outstanding Associate Editor Canadian Journal of Plant Science 2013
2、優(yōu)秀碩士學(xué)位論文（李其剛）指導(dǎo)教師 南京農(nóng)業(yè)大學(xué) 2013
3、優(yōu)秀碩士學(xué)位論文（徐宇）指導(dǎo)教師 江蘇省教育廳 2012
4、優(yōu)秀博士學(xué)位論文（何小紅）指導(dǎo)教師 南京農(nóng)業(yè)大學(xué) 2012
5、《生物統(tǒng)計與田間試驗》國家精品課程負(fù)責(zé)人（第2） 教育部 2007
6、教育部新世紀(jì)優(yōu)秀人才支持計劃獲得者 教育部 2005
7、江蘇省優(yōu)秀博士學(xué)位論文獲得者 江蘇省教育廳 2004
8、南京農(nóng)業(yè)大學(xué)優(yōu)秀博士 南京農(nóng)業(yè)大學(xué) 2004
9、植物數(shù)量性狀主基因-多基因遺傳體系的分離分析方法 教育部自然科學(xué)二等獎（第2） 2003
10、南京農(nóng)業(yè)大學(xué)獎教金獲得者 南京農(nóng)業(yè)大學(xué) 2000、2002
11、四川省優(yōu)秀青年骨干教師 四川省教委 1995

自1986年以來教學(xué)情況：
1、自1987年3月以來，主講本科生課程《生物統(tǒng)計學(xué)》、《試驗設(shè)計》、《非參數(shù)估計方法》；
2、自2005年以來，主講研究生課程《數(shù)量遺傳學(xué)》、《高級生物統(tǒng)計學(xué)》、《試驗設(shè)計》、
《統(tǒng)計基因組學(xué)》、《遺傳數(shù)據(jù)分析》和《作物學(xué)進(jìn)展----比較基因組學(xué)與進(jìn)化基因組學(xué)

科研項目1、主持華中農(nóng)業(yè)大學(xué)引進(jìn)人才項目1項
2、參加973項目2項(2006CB101708, 2011CB109300)
3、主持國家自然科學(xué)基金項目3項（30470998; 30671333; 30971848）；學(xué)術(shù)指導(dǎo)國家自然科學(xué)
基金項目4項（30900842; 31000666; 2013年兩項）；
4、主持教育部新世紀(jì)優(yōu)秀人才支持計劃項目1項
5、主持教育部高校博士點基金項目3項
6、主持教育部與人事部留學(xué)回國人員啟動基金項目各1項
7、主持江蘇省自然科學(xué)基金項目2項、重慶市應(yīng)用基礎(chǔ)研究項目1項
8、主持中央高�；�本科研業(yè)務(wù)費創(chuàng)新團隊項目1項、參與中央高�；�本科研業(yè)務(wù)費項目1項、
指導(dǎo)中央高�；�本科研業(yè)務(wù)費項目2項
9、主持作物遺傳與種質(zhì)創(chuàng)新國家重點實驗室自主創(chuàng)新項目1項

發(fā)明專利及獲獎情況1、主持研制植物數(shù)量性狀主基因+多基因混合遺傳分析軟件包SEA，近10余年來引用2000次以上；
（軟件索取聯(lián)系方式：soyzhang@mail.hzau.edu.cn）
2、偏分離群體連鎖遺傳圖矯正軟件包DistortedMap
(軟件下載地址：http://www.nature.com/hdy/journal/v112/n5/suppinfo/hdy2013127s1.html)
3、NCII遺傳交配設(shè)計QTL上位性檢測windows界面軟件包

發(fā)表的論文及著作主要英文論文（*：通訊作者；#：同等貢獻(xiàn)）
2015
56 Zhou Ling (#), Wang Shi-Bo (#), Jian Jianbo (#), Geng Qing-Chun, Wen Jia, Song
Qijian, Wu Zhenzhen, Li Guang-Jun, Liu Yu-Qin, Jim M. Dunwell, Zhang Jin, Feng
Jian-Ying Feng, Niu Yuan, Zhang Li, Ren Wen-Long & Zhang Yuan-Ming (*). 2015.
Identification of domestication-related loci associated with flowering time and
seed size in soybean with the RAD-seq genotyping method. Scientific Reports 5:
9350 (DOI: 10.1038/srep09350) (2013 IF: 5.078)
55 Bu Su-Hong(#),Zhao Xinwang(#), Yi Can, Wen Jia, Tu Jinxing, Yuan-Ming Zhang*.
Interacted QTL mapping in partial NCII design provides evidences for breeding
by design. PLoS ONE 10(3):e0121034. doi:10.1371/journal.pone.0121034
2014
54 Xie F-T, Niu Y, Zhang J, Bu S-H, Zhang H-Z, Geng Q-C, Feng J-Y, Zhang Y-M*. 2014. Fine
mapping of quantitative trait loci for seed size traits in soybean. Molecular Breeding
34:2165-2178
53 Meng Li, Xiaolei Liu, Peter Bradbury, Jianming Yu, Yuan-Ming Zhang*, Rory J Todhunter,
Edward S Buckler,Zhiwu Zhang*. 2014. Enrichment of statistical power for genome-wide
association studies. BMC Biology 12:73 (2013 IF: 7.43)
52 Xie Shang-Qian, Feng Jian-Ying, Zhang Y-M*. 2014. Linkage group correction using epistatic
distorted markers in F2 and backcross populations. Heredity 112: 479-488
51 Zhang W-J, Niu Y, Bu S-H, Li M, Feng J-Y, Zhang J, Yang S-X, Medrine Mmyi Odinga, Wei
S-P, Liu X-F, Zhang Y-M*. 2014. Epistatic association mapping for alkaline and salinity
tolerance traits in the soybean germination stage. PLoS ONE 9(1): e84750
2013
50 Li Qi-Gang, Zhang Li, Li Chun, Zhang Y-M*. 2013. Comparative genomics suggests that an
ancestral polyploidy event leads to enhanced root nodule symbiosis in the Papilionoideae.
Molecular Biology and Evolution 30(12): 2602-2611 (2013 IF: 14.308)
49 Li Q-G, Zhang Y-M*. 2013. The origin and functional transition of P34. Heredity 110(3):
259-266
48 Wen Jia, Can Van Toan, Zhang Y-M*. 2013. Multi-QTL mapping for quantitative traits using
distorted markers. Molecular Breeding 31(2): 395-404
47 Niu Yuan, Xu Yu, Liu Xiao-Feng, Yang Sheng-Xian, Wei Shi-Ping, Xie Fang-Teng, Zhang Y-M*.
2013. Association mapping for seed size and shape traits in soybean cultivars. Molecular
Breeding 31(4): 785-794
46 Xie Shang-Qian, Jia Wen, Zhang Y-M*. 2013. Multi-QTL mapping for quantitative traits using
epistatic distorted markers. PLoS ONE 8(7): e68510
45 Feng J-Y, Zhang J, Zhang W-J, Wang S-B, Han S-F, Zhang Y-M*. 2013. An efficient
hierarchical generalized linear mixed model for mapping QTL of ordinal traits in crop
cultivars. PLoS ONE 8(4): e59541
44 Zhang T*, Qian N, Zhu X, Chen H, Wang S, Mei H, Zhang Y. 2013. Variations and transmission
of QTL alleles for yield and fiber qualities in upland cotton cultivars developed in China.
PLoS ONE 8(2): e57220
2012
43 Li C, Li Q-G, Jim M. Dunwell, Zhang Y-M*. 2012. Divergent evolutionary pattern of starch
biosynthetic pathway genes in grasses and dicots. Molecular Biology and Evolution 29(10):
3227- 3236 (2012 IF: 10.353)
42 Zhang J, Yue C, Zhang Y-M*. 2012. Bias correction for estimated QTL effects using the
penalized maximum likelihood method. Heredity 108: 396-402
41 Li C, Li M, Jim M. Dunwell, Zhang Y-M*. 2012. Gene duplication and accelerated
evolutionary rate contribute to the higher ability of protein synthesis in dicots.
BMC Evolutionary Biology 12: 15
40 He Xiao-Hong, Hu Zhongli, Zhang Y-M*. 2012. Genome-wide mapping of QTL associated with
heterosis in the RIL-based NCIII design. Chin Sci Bull 57(21): 2655-2665
39 Liu R, Wang B, Guo W, Qin Y, Wang L, Zhang Y, Zhang T*. 2012. Quantitative trait loci
mapping for yield and its components by using two immortalized populations of a
heterotic hybrid in Gossypium hirsutum L. Molecular Breeding 29(2): 297-311
38 Jiangbo Zhou, Yuan-Ming Zhang, Haiyan Lü, Aiqing You, Lili Zhu, Guangcun He*. 2012.
Transmission of important chromosomal regions under selection revealed in rice pedigree
breeding programs. Molecular Breeding 30(2): 717-729
37 Chen X, Guo W, Liu B, Zhang Y, Song X, Zhang L, Zhang T*. 2012. Molecular mechanisms of
fiber differential development between G. barbadense and G. hirsutum revealed by
genetical genomics. PLoS ONE 7(1): e30056
36 Guo H-L, Li Y, Xuan J-P, Liu J-X*, Zhang Y-M, Zheng Yi-Qi. 2012. Association of
molecular markers with cold tolerance and green period in Zoysiagrass (Zoysia Willd.).
Breeding Science 62: 320-327
2011
35 Li C, Zhang Y-M*. 2011. Molecular evolution of glycinin and β-conglycinin gene
families in soybean (Glycine max L. Merr.). Heredity 106: 633-641
34 Xu Y, Li H-N, Li G, Wang X, Cheng L, Zhang Y-M*. 2011. Mapping quantitative trait loci
for seed size traits in soybean (Glycine max L. Merr.). Theor Appl Genet, 122: 581-594
33 He X-H, Qin H, Hu Z, Zhang T, Zhang Y-M*. 2011. Mapping of epistatic quantitative trait
loci in four-way crosses. Theor Appl Genet 122: 33-48
32 Lü H-Y, Liu X-F, Wei S-P, Zhang Y-M*. 2011. Epistatic association mapping in homozygous
crop cultivars. PLoS ONE 6(3): e17773
31 He X-H, Zhang Y-M*. 2011. A complete solution for dissecting pure main and epistatic
effects of QTL in triple testcross design. PLoS ONE 6(9): e24575
30 Kuang F-L, Wang X, Zhou L, Zhang Y-M*. 2011. Linkage graph analysis: A linkage-group-based
QTL synthesis analysis approach. China Sci Bull 56: 1092-1099
29 Zhu X, Ai N, Zhang Y, Guo W, Zhang T-Z*. 2011. Relationships between differential gene
expression and heterosis in cotton hybrids developed from the foundation parent CRI-12 and
its pedigree-derived lines. Plant Science 180: 221-227
2010
28 Dou BD*, Hou BW, Wang F, Yang JB, Ni ZF, Sun QX, Zhang Y-M*. 2010. Further mapping of
quantitative trait loci for female sterility in wheat. Genetics Research 92(1): 63-70
27 Liu G, Li M, Wen J, Du Y, Zhang Y-M*. 2010. Functional mapping of quantitative trait
loci associated with rice tillering. Molecular Genetics and Genomics 284: 263-271
26 Li G-J, LI H-N, Cheng L-G, Zhang Y-M*. 2010. QTL Analysis for Dynamic Expression of
Chlorophyll Content in Soybean (Glycine max L. Merr.) Acta Agronomica Sinica 36(2):
242-248
2009
25 Lü H-Y, Li M, Yao L-L, Li G-J, Lin F, Zhang Y-M*. 2009. Multi-loci in silico mapping in
inbred lines. Heredity 103: 346-354
24 Zhang Y-M*, Gai JY. 2009. Methodologies for segregation analysis and QTL mapping in
plant.The third International Conference on Quantitative Genetics. Genetica 136: 311-318
2008
23 He X-H, Zhang Y-M*. 2008. Mapping epistatic quantitative trait loci underlying endosperm
traits using all markers on the entire genome in random hybridization design. Heredity 101:
39-47
22 Zhang Y-M*, Lü H-Y, Yao L-L. 2008. Multiple quantitative trait loci Haseman-Elston
regression using all markers on the entire genome. Theor Appl Genet 117: 683-690
21 Zhu C, Zhang Y-M*, Guo Z. 2008. Mapping quantitative trait loci for binary trait in the
F2:3 design. Journal of Genetics 87(3): 201-207
20 Qin H, Guo W, Zhang Y-M, Zhang TZ*. 2008. QTL mapping of yield and fiber traits based on
a four-way cross population in Gossypium hirsutum L. Theor Appl Genet 117: 883-894
2007
19 Zhu C, Wang C, Zhang Y-M*. 2007. Modeling segregation distortion for viability selection
I.Reconstruction of linkage maps with distorted markers. Theor Appl Genet 114: 295-305
18 Zhu C, Zhang Y-M*. 2007. An EM algorithm for mapping segregation distortion loci. BMC
Genetics 8: 82
17 Zhu C, Huang J, Zhang Y-M*. 2007. Mapping binary trait loci in the F2:3 design. Journal
of Heredity 98:337-344
16 Geng J, Zhu C, Zhang X, Cheng Y, Zhang Y-M*, Hou X*. 2007. A genetic linkage map of
nonheading chinese cabbage. Journal of American Society for Horticultural Science
132: 816-823
15 Zhu C, Wang F, Wang J，Li G，Zhang H*, Zhang Y-M*. 2007. Reconstruction of linkage maps
in the segregation populations of backcross, double haploid and recombinant inbred line.
Chin Sci Bull 52: 1648-1653
14 Wang X, Hu Z, Wang W, Li Y, Zhang Y-M, Xu C*. 2007. A mixture model approach to the
mapping of QTL controlling endosperm traits with bulked samples Status. Genetica 132:
59-70
2006
13 Zhang Y-M*. 2006. Advances on methods for mapping QTL in plants. China Sci Bull 51:
2223-2231
12 Zhang Y-M*. 2006. Shrinkage estimation method for mapping multiple quantitative trait
loci.Acta Genetica Sinica 33(10): 861-869
11 Xue Y, Wan J*, Jiang L, Wang C, Liu L, Zhang Y-M, Zhai H. 2006. Identification of
quantitative trait loci associated with aluminum tolerance in rice (Oryza sativa L.).
Euphytica 150: 37-45
2005
10 Zhang Y-M, Mao Y, Xie C, Smith H, Luo L, Xu S*. 2005. Mapping quantitative trait loci
using naturally occurring genetic variance among commercial inbred lines of maize (Zea
mays L.). Genetics 169: 2267-2275
9 Wang H, Zhang Y-M, Li X, Masinde GL, Mohan S, Baylink DJ, Xu S*. 2005. Bayesian
shrinkage estimation of quantitative trait loci parameters. Genetics 170: 465-480
(Comment: Nat Rev Genet 2006, 7: 229-237)
8 Zhang Y-M, Xu S*. 2005. A penalized maximum likelihood method for estimating
epistatic effects of QTL. Heredity 95: 96-104
7 Luo L, Zhang Y-M, Xu S*. 2005. A quantitative genetics model for viability selection.
Heredity 94: 347-355 (Editor Comment: Heredity 2005 94: 273-274)
6 Xu C, Zhang Y-M, Xu S*. 2005. An EM algorithm for mapping quantitative resistance
loci.Heredity 94: 119-128
5 Zhang Y-M, Xu S*. 2005. Advanced statistical methods for detecting multiple
quantitative trait loci. Recent Research Developments in Genetics and Breeding 2:
1-23 (Invited Review)
4 Hansen C, Yi N, Zhang Y-M, Xu S, Gavora J, Cheng HH*. 2005. Identification of QTL for
production traits in chickens. Animal Biotechnology 16: 67-79
2004
3 Zhang Y-M, Xu S*. 2004. Mapping quantitative trait loci in F2 incorporating phenotypes
of F3 progeny. Genetics 166: 1981-1993
2003
2 Zhang Y-M*, Gai JY, Yang Y-H. 2003. The EIM algorithm in the joint segregation analysis
of quantitative traits. Genetics Research 81: 157-163
1 Tao A, Zeng H, Zhang Y-M，Xie G-S, Qin F-L, Zheng Y-L, Zhang D-P*. 2003. Genetic
analysis of the low critical sterility temperature point in photoperiod-thermo sensitive
genic male sterile rice. Acta Genetica Sinica 30(1): 40-48

2009年以來的中文學(xué)術(shù)論文（2009年以前的中文論文未列入）
1 程利國, 李廣軍, 劉玉芹, 李河南，章元明. 大豆對大豆花葉病毒Sa 株系抗擴展特性的遺傳分析.
南京農(nóng)業(yè)大學(xué)學(xué)報, 2009, 32(4): 13 17
2 李河南，汪霞，李廣軍，程利國，何小紅，張國政，章元明。大豆粒形的主基因+多基因混合遺傳。
大豆科學(xué) 2009，28(1): 16-20
3 李廣軍，李河南，程利國，章元明。大豆對豆卷葉螟抗性的QTL定位。中國油料作物學(xué)報 2009，
31(3): 365-369
4 匡峰磊, 汪霞, 周玲, 章元明。關(guān)聯(lián)圖分析: 一種基于連鎖圖的QTL 綜合分析方法�？茖W(xué)通報
2010，55(29): 2828-2836
5 李廣軍，李河南，程利國，章元明。大豆葉綠素含量動態(tài)表達(dá)的QTL 分析。作物學(xué)報 2010，
36(2): 242-248
6 汪霞，徐宇，李廣軍，李河南，艮文全，章元明。大豆百粒重QTL 定位。作物學(xué)報 2010，
36(10): 1674-1682
7 魏世平，劉曉芬，楊勝先，呂海燕，牛遠(yuǎn)，章元明。中國栽培大豆群體結(jié)構(gòu)不同分類方法的比較.
南京農(nóng)業(yè)大學(xué)學(xué)報 2011, 34(2):13-17
8 汪霞，徐宇，李廣軍，李河南，章元明。大豆株高QTL 定位及Meta 分析. 南京農(nóng)業(yè)大學(xué)學(xué)報
2011, 34(3): 13-19
9 章元明. 植物數(shù)量遺傳學(xué)的建立、發(fā)展與展望. 南京農(nóng)業(yè)大學(xué)學(xué)報 2012, 35(5): 19-24
10 牛遠(yuǎn)，徐宇，李廣軍，王云清，劉曉芬，李河南，魏世平，章元明。大豆籽粒大小和粒形的馴化
研究。大豆科學(xué) 2012，31(4): 522-528
11 曹錫文，劉兵，章元明. 植物數(shù)量性狀分離分析Windows 軟件包SEA 的研制。南京農(nóng)業(yè)大學(xué)學(xué)報
2013, 36(6): 1-6
12 閆寧，謝尚潛，耿青春，徐宇，李廣軍，劉兵，汪霞，李其剛，章元明。利用Bayes 分層廣義
線性模型剖析大豆籽粒性狀的遺傳基礎(chǔ)。作物學(xué)報 2013，39(2): 258-268
13 牛遠(yuǎn)，謝芳騰，布素紅，謝尚潛，韓世鳳，耿青春，劉兵，章元明。大豆粒形性狀QTL 的精細(xì)
定位。作物學(xué)報 2013，39(4): 609-616

教材與專著
1、Zhang Y-M*. 2012. F2 designs for QTL analysis. In: Scott A. Rifkin (ed.), Quantitative
Trait Loci (QTL): Methods and Protocols. Methods in Molecular Biology 871: 17-29.
DOI 10.1007/978- 1-61779-785-9_2.Springer Science + Business Media, LLC
2、蓋鈞鎰、章元明、王建康。植物數(shù)量性狀遺傳體系�？茖W(xué)出版社，2003
3、謝莊、章元明主編。水產(chǎn)試驗統(tǒng)計學(xué)。中國農(nóng)業(yè)科技出版社，1998
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